--- title: Dot Pattern Similarity date: last-modified lightbox: true toc: true page-layout: full toc-depth: 3 code-fold: true code-tools: true execute: warning: false eval: true --- - catLearn accuracy refers to accuracy on the categorization task in the Hu & Nosofsky 2024 study.- prototype sets refer to sets of 3 prototypes that correspond to a single participant in the Hu & Nosofsky 2024 study. - prototype pairs refer to the specific pairs of prototypes that are displayed together on a rating trial (3 pairs per set). ```{r} :: p_load (dplyr,purrr,tidyr,ggplot2, here, patchwork, walk (c ("dplyr" , "lmerTest" ), conflict_prefer_all, quiet = TRUE )options (digits= 2 , scipen= 999 , dplyr.summarise.inform= FALSE )walk (c ("fun_plot" ), ~ source (here:: here (paste0 ("R/" , .x, ".R" ))))<- read.csv (here ("Stimulii" ,"mc24_prototypes.csv" )) |> mutate (set= paste0 (sbjCode,"_" ,condit)) <- read.csv (here ("data" ,"mc24_sbj_cat.csv" ))<- list (path= list.files (here:: here ("data/dotSim_data" ),full.names= TRUE ))<- map_dfr (dfiles$ path, ~ read.csv (.x))<- map_dfr (dfiles$ path, ~ {read.csv (.x) |> mutate (sfile= tools:: file_path_sans_ext (basename (.x)))}) |> select (- trial_index, - internal_node_id,- trial_type) |> mutate (set = paste (str_extract (item_label_1, "^ \\ d+" ),str_extract (item_label_1, "[a-z]+" ), sep = "_" )) |> mutate (pair_label = paste0 (item_label_1,"_" ,item_label_2)) |> relocate (sbjCode,date,set,pair_label,trial,item_label_1,item_label_2,response,rt)<- d |> pivot_longer (cols= c (item_label_1, item_label_2), names_to= "item_label" , values_to= "item" ) |> group_by (set) |> summarise (n= n_distinct (sbjCode),resp= mean (response),sd= sd (response)) |> arrange (desc (n))# length(unique(mc_proto$set)) # 304 <- mc24_proto |> group_by (set) |> slice_head (n= 1 ) |> select (id,file,set) |> left_join (setCounts,by= "set" ) |> mutate (n = ifelse (is.na (n), 0 , n), .groups= "drop" ) |> arrange (n) |> ungroup ()<- d |> group_by (pair_label,set) |> summarise (n= n (),mean_resp= mean (response),sd= sd (response)) |> arrange (desc (n)) |> ungroup ()<- d |> pivot_longer (cols= c (item_label_1, item_label_2), names_to= "item_label" , values_to= "item" ) |> group_by (item,file) |> summarise (n_rating= n (),resp= mean (response),sd= sd (response)) |> arrange (desc (n_rating))<- sbj_cat |> mutate (item= item_label) |> left_join (patternAvg,by= c ("file" ,"item" )) |> arrange (desc (n_rating)) |> #remove rows where n_rating is NA, or less than 4 filter (! is.na (n_rating),n_rating>= 12 ) |> mutate (sim_group = ifelse (resp> 6.0 ,"Very Similar" ,ifelse (resp< 3.5 ,"Very Dissimilar" ,"Medium" ))) |> mutate (sim_group= factor (sim_group,levels= c ("Very Dissimilar" ,"Medium" ,"Very Similar" ))) <- cat_sim |> filter (Phase== 2 ) #cor(cat_sim$resp,cat_sim$Corr) # m1 <- lmer(Corr ~ resp + (1|sbjCode), data=cat_sim) # summary(m1) # m1 <- lmer(Corr ~ resp + (1|Pattern.Type) + (1|sbjCode), data=cat_sim) # summary(m1) # m1 <- lmer(Corr ~ resp*Pattern.Type*condit + (1|sbjCode), data=cat_sim) # summary(m1) # m1 <- lmer(Corr ~ sim_group + (1|sbjCode), data=cat_sim) # summary(m1) # m1 <- lmer(Corr ~ sim_group*condit + (1|sbjCode), data=cat_sim) # summary(m1) # m1 <- lmer(Corr ~ sim_group*condit*Pattern.Type + (1|sbjCode), data=cat_sim) # summary(m1) ``` ## Correlations with Accuracy in Hu & Nosofsky 2024 #### Assess # of patterns in various binnings - e.g. quartile, decile ```{r} # bin data by rating (resp) into quartiles <- cat_sim |> mutate (Quartile = ntile (resp, 4 ))|> group_by (Quartile) |> summarize ("Avg. Similarity Rating" = mean (resp),sd= sd (resp),n_ratings= n_distinct (file), .groups= "drop" ) <- cat_sim |> mutate (Decile = ntile (resp, 10 ))|> group_by (Decile) |> summarize ("Avg. Similarity Rating" = mean (resp),sd= sd (resp),n_ratings= n_distinct (file), .groups= "drop" ) <- cat_sim |> group_by (sim_group) |> summarize ("Avg. Similarity Rating" = mean (resp),sd= sd (resp),n_ratings= n_distinct (file), .groups= "drop" ) |> kbl (caption= "Quartiles" )|> kbl (caption= "Deciles" )|> kbl (caption= "Extreme Groups" )``` ```{r} #| label: fig-sim-acc-test #| fig-cap: "2024 CatLearn accuracy by different similarity rating groups" #| fig-width: 10 #| fig-height: 8 <- cat_sim_test |> mutate (Quartile = as.factor (ntile (resp, 4 ))) |> ggplot (aes (x= Quartile,y= Corr,fill= Quartile)) + + facet_wrap (~ Pattern.Type) + labs (y= "CatLearn Accuracy" , x= "Similarity Rating Quintile" , title= "Effect by Pattern Type" )<- cat_sim_test |> mutate (Decile = as.factor (ntile (resp, 10 ))) |> ggplot (aes (x= Decile,y= Corr,fill= Decile)) + + facet_wrap (~ Pattern.Type) + labs (y= "CatLearn Accuracy" , x= "Similarity Rating Decile" , title= "Effect by Pattern Type" )<- cat_sim_test |> mutate (Quartile = as.factor (ntile (resp, 4 ))) |> ggplot (aes (x= Quartile,y= Corr,fill= Quartile)) + + facet_wrap (~ condit) + labs (y= "CatLearn Accuracy" , x= "Similarity Rating Quartile" , title= "Effect by Training Condition" )<- cat_sim_test |> mutate (Decile = as.factor (ntile (resp, 10 ))) |> ggplot (aes (x= Decile,y= Corr,fill= Decile)) + + facet_wrap (~ condit) + labs (y= "CatLearn Accuracy" , x= "Similarity Rating Decile" , title= "Effect by Training Condition" )<- cat_sim_test |> mutate (Quartile = as.factor (ntile (resp, 4 ))) |> ggplot (aes (x= Quartile,y= Corr,fill= Quartile)) + + facet_nested_wrap (~ condit+ Pattern.Type) + labs (y= "CatLearn Accuracy" , x= "Similarity Rating Quintile" , title= "Effect by Training Condition and Pattern Type" )+ p4+ p6<- cat_sim_test |> ggplot (aes (y= Corr,x= Pattern.Type, fill= sim_group)) + + labs (title= "Group by Pattern Type" ,y= "CatLearn Accuracy" )<- cat_sim_test |> ggplot (aes (y= Corr,x= condit, fill= sim_group)) + + labs (title= "Group by Condit" ,y= "CatLearn Accuracy" )/ p10``` ### learning curves ```{r} #| label: fig-train-sim #| fig-cap: "Training accuracy by block and similarity rating" #| fig-width: 10 #| fig-height: 9 # trSim1 <- cat_sim |> filter(Phase==1) |> # group_by(condit,Block) |> # mutate(Quartile = as.factor(ntile(resp, 4))) |> # ggplot(aes(x=Block,y=Corr, fill=Quartile)) + stat_bar+ facet_wrap(~condit) + # labs(x="Training Block", y="CatLearn Accuracy",fill="Similarity Rating Quartile") # trSim2 <- cat_sim |> filter(Phase==1) |> # group_by(condit,Block) |> # ggplot(aes(x=Block,y=Corr, fill=sim_group)) + # stat_bar+ # facet_wrap(~condit) + # labs(x="Training Block", y="CatLearn Accuracy",fill="Similarity Rating Group") <- cat_sim |> filter (Phase== 1 ) |> group_by (condit,Block) |> mutate (Quartile = as.factor (ntile (resp, 4 ))) |> ggplot (aes (x= Block,y= Corr, col= Quartile)) + stat_summary (shape= 0 ,geom= "point" ,fun= "mean" )+ stat_summary (geom= "line" ,fun= "mean" )+ facet_wrap (~ condit) + labs (x= "Training Block" , y= "CatLearn Accuracy" ,fill= "Similarity Rating Quartile" ,title = "Training Accuracy by Block and Similarity Quartile" )<- cat_sim |> filter (Phase== 1 ) |> group_by (condit,Block) |> ggplot (aes (x= Block,y= Corr, col= sim_group)) + stat_summary (shape= 0 ,geom= "point" ,fun= "mean" )+ stat_summary (geom= "line" ,fun= "mean" )+ facet_wrap (~ condit) + labs (x= "Training Block" , y= "CatLearn Accuracy" ,fill= "Similarity Rating Group" , title= "Training Accuracy by Block and Similarity Extreme similarity Grouping" )/ trSim2``` ### Individual Learning Curves ```{r} #| label: fig-train-sim-indv #| fig-cap: "Training accuracy by block and similarity rating" #| fig-width: 12 #| fig-height: 15 <- cat_sim |> filter (Phase== 1 , ! (sim_group== "Medium" )) |> group_by (condit,Block) |> mutate (Quartile = as.factor (ntile (resp, 4 ))) |> ggplot (aes (x= Block,y= Corr, col= sim_group)) + stat_summary (shape= 0 ,geom= "point" ,fun= "mean" )+ stat_summary (geom= "line" ,fun= "mean" )+ facet_wrap2 (~ condit+ sim_group+ sbjCode) + labs (x= "Training Block" , y= "CatLearn Accuracy" ,fill= "Similarity Rating Group" , title= "Training Accuracy by Block and Similarity Extreme similarity Grouping" )#cat_sim |> filter(Phase==1) |> group_by(id) |> summarize(n_sim = n_distinct(sim_group)) |> arrange(desc(n_sim)) |> head(10) # cat_sim |> filter(Phase==1) |> group_by(id) |> mutate(n_sim = n_distinct(sim_group)) |> filter(n_sim>1) |> group_by(condit,Block) |> # ggplot(aes(x=Block,y=Corr, col=sim_group)) + # stat_summary(shape=0,geom="point",fun="mean")+ # stat_summary(geom="line",fun="mean")+ # facet_wrap2(~condit+sbjCode) ``` ```{r} #| label: fig-sim-acc-corr #| fig-cap: "Correlations between similarity ratings and CatLearn accuracy" #| fig-width: 11 #| fig-height: 9 <- cat_sim_test |> ggplot (aes (x= resp,y= Corr,col= Pattern.Type,fill= Pattern.Type)) + geom_point () + geom_smooth (method = "lm" ) + labs (y= "CatLearn Accuracy" , x= "Similarity Rating" )<- cat_sim_test |> ggplot (aes (x= resp,y= Corr, col= Pattern.Type,fill= Pattern.Type)) + geom_point () + geom_smooth (method = "lm" ) + facet_wrap (~ condit) + labs (y= "CatLearn Accuracy" , x= "Similarity Rating" )<- cat_sim_test |> mutate (Decile = ntile (resp, 10 )) |> ggplot (aes (x= Decile,y= Corr, col= Pattern.Type,fill= Pattern.Type)) + geom_point () + geom_smooth (method = "lm" ) + labs (y= "CatLearn Accuracy" , x= "Similarity Rating Decile" )<- cat_sim_test |> mutate (Decile = ntile (resp, 10 )) |> ggplot (aes (x= Decile,y= Corr, col= condit,fill= condit)) + geom_point () + geom_smooth (method = "lm" ) + labs (y= "CatLearn Accuracy" , x= "Similarity Rating Decile" , fill= "Training Condition" , col= "Training Condition" )+ p2) / (p3+ p4)``` #### Stucture of dataframe after merging similarity ratings with CatLearn accuracy - Each subject in the 2024 study has a similarity score for each of their 3 categories. (averaged over 2 comparisons with that categories prototype)- The same category similarity scores are then compared to their accuracy for each of the 5 Pattern Tyeps (old, prototype, new low, new med, new high)- 5 Pattern types * 3 Categories = 15 comparisons per subject```{r} #| label: tbl-htw-modelError-e1 #| tbl-cap: "Example of how data is structure after combining similarity ratings with CatLearn accuracy. 5 Pattern types * 3 Categories = 15 rows per subject in the 2024 study" #| eval: true %>% # round all numerics except sbjCode to 2 decimal places mutate (across (where (is.numeric), ~ round (., 1 ))) |> select (- id,- sim_group,- item_label) |> relocate (item,file, .after= sd) |> select (- Phase,- Block) |> rename ("Category Similarity" = resp, "CatLearn Accuracy" = Corr) |> :: datatable (options = list (pageLength = 6 ))# cat_sim_test %>% # round all numerics except sbjCode to 2 decimal places # mutate(across(where(is.numeric), ~round(., 1))) |> select(-id,-sim_group,-item_label) |> # filter(sbjCode==316) |> # relocate(item,file, .after=sd) |> # select(-Phase,-Block, -file) |> # rename("Category Similarity" = resp, "CatLearn Accuracy" = Corr) |> pander::pandoc.table(style="rmarkdown",split.table=Inf) ``` ## Data Inspection & Sanity Checks ```{r} #| label: tbl-totals #| tbl-cap: "Current counts of unique subjects, and prototype sets" <- setCounts2 |> summarise ("Avg Ratings Per Set" = mean (n)) |> pull (1 )|> summarize ("N Subjects" = n_distinct (sbjCode), "N Prototype Sets" = n_distinct (set)) |> mutate ("Avg Ratings Per Set" = avg_set_rating) |> kbl ()``` ### Prototype set counts ```{r} |> group_by (n) |> summarise (nc= n ()) |> rename ("Number of times prototype set has been included in the study" = n, "Number of prototype sets with this count" = nc) |> gt () |> tab_spanner (label = "Prototype Set Counts" ) |> tab_header (title = "Prototype Set Counts" ) |> tab_source_note ("Note: The number of times a prototype set has been included in the study is equal to the number of participants who rated the set." ``` ```{r} #| fig-cap: Prototype set counts #| fig-width: 12 #| fig-height: 9 # d |> filter(sbjCode==11) |> select(sbjCode,date,trial,pair_label,set,rt,time_elapsed,time) # d |> group_by(sbjCode,set) |> # summarize (n=n()) |> # gt() #d |> group_by(sbjCode, item_label_1, item_label_2) |> summarise(n=n()) # (1-.33)^8 # (factorial(8)/(factorial(6)*factorial(8-6))) * (.33^6)*((1-.33)^(8-6)) # (factorial(8)/(factorial(7)*factorial(8-7))) *(.33^6)*((1-.33)^(8-7)) # (factorial(8)/(factorial(8)*factorial(8-8))) *(.33^6)*(1-.33)^(8-8) # d |> pivot_longer(cols=c(item_label_1, item_label_2), names_to="item_label", values_to="item") |> # group_by(sbjCode, item) |> summarise(n=n()) # patternCounts <- d |> pivot_longer(cols=c(item_label_1, item_label_2), names_to="item_label", values_to="item") |> # group_by(item) |> summarise(n=n(),resp=mean(response),sd=sd(response)) |> arrange(desc(n)) # d |> # pivot_longer(cols=c(item_label_1, item_label_2), names_to="item_label", values_to="item") |> select(sbjCode,set,pair_label,item_label,item,response) |> group_by(set) |> # summarize(n=n_distinct(sbjCode)) |> arrange(desc(n)) # d |> group_by(sbjCode, file) |> summarise(n=n()) # d |> group_by(sbjCode, set) |> summarise(n=n()) # d |> group_by(sbjCode) |> summarise(n_distinct(file)) # d |> group_by(sbjCode) |> summarise(n_distinct(set)) # sp <- setCounts2 |> # mutate(set=reorder(set,n)) |> # ggplot(aes(x=set,y=n)) + # geom_col() + # theme(legend.title=element_blank(), # axis.text.x = element_text(size=5,angle = 90, hjust = 0.5, vjust = 0.5)) + # labs(x="Prototype Set", y="Number of Participants to rate set") <- setCounts2 |> ggplot (aes (x= n)) + geom_histogram (binwidth = 1 ) + scale_x_continuous (breaks= seq (0 , max (setCounts2$ n), by = 1 )) + geom_text (stat= "count" , aes (label= ..count..), vjust= - 0.5 ) + labs (x= "Number of times prototype set has been included in the study" , y= "Number of prototype sets for each count" ) #sp/sh ``` ### Rating Distributions ```{r} #| fig-cap: Rating distributions #| fig-width: 12 #| fig-height: 13 <- d |> ggplot (aes (x= response))+ geom_histogram (binwidth= 1 ) + scale_x_continuous (breaks= seq (1 , 9 , by = 1 )) + coord_cartesian (xlim = c (1 , 9 )) + labs (title= "Aggregate Rating Distribution" , x= "Rating" , y= "Count" ) <- d |> ggplot (aes (x= response))+ geom_histogram (binwidth= 1 ) + facet_wrap (~ sbjCode) + scale_x_continuous (breaks= seq (1 , 9 , by = 1 )) + coord_cartesian (xlim = c (1 , 9 )) + labs (title= "Rating Distribution per Sbj." , x= "Rating" , y= "Count" ) / pir``` ### Reaction Time Distributions ```{r} #| fig-cap: Reaction time distributions #| fig-width: 12 #| fig-height: 13 <- d |> ggplot (aes (x= rt))+ geom_density () + labs (title= "Aggregate Reaction Time Distribution" , x= "Reaction Time (ms)" , y= "Density" )<- d |> ggplot (aes (x= rt))+ geom_density () + facet_wrap (~ sbjCode,scale= "free_x" ) + labs (title= "Reaction Time Distribution per Sbj." , x= "Reaction Time (ms)" , y= "Density" )/ prtid``` ### Individual Subject Ratings ```{r} #| label: tbl-indv-sbj #| tbl-cap: "Individual Subject Ratings " # d |> summarize(n=n(), n_distinct(sbjCode), n_distinct(file), n_distinct(set), n_distinct(trial), n_distinct(item_label_1), n_distinct(item_label_2)) # d %>% # filter(sbjCode == 11) %>% # select(sbjCode, date, trial, set, rt, time) %>% # mutate(time_parsed = parse_date_time(paste(date, time), orders = c("mdY IMS p", "mdy IMS p"))) %>% # group_by(sbjCode, date) %>% # summarise(start_time = min(time_parsed), end_time = max(time_parsed)) %>% # mutate(endTimeMinusStart = end_time - start_time) <- function (id) {|> filter (sbjCode== id) |> ggplot (aes (x = response)) + geom_histogram (binwidth= 1 ,fill = 'dodgerblue4' ) + scale_x_continuous (breaks= seq (1 , 9 , by = 1 )) + coord_cartesian (xlim = c (1 , 9 )) + theme_minimal () + theme (axis.title.x= element_blank (),axis.title.y= element_blank (),axis.text.x= element_text (size= 26 )) <- d |> group_by (sbjCode) |> #filter(sbjCode<5) |> mutate (time_parsed = parse_date_time (paste (date, time), orders = c ("mdY IMS p" , "mdy IMS p" ))) |> summarize ("Mean Rating" = mean (response),"SD Rating" = sd (response), "Mean RT" = mean (rt)/ 1000 , #"Total Time (min)" = max(time_elapsed)/60000, "Total Time (min)" = round (difftime (max (time_parsed), min (time_parsed), units = "mins" ),1 ),n_prototype_sets = n_distinct (set), "N Trials" = n_distinct (trial)) |> mutate ("Response_Distribution" = sbjCode) |> gt () |> text_transform (locations = cells_body (columns = 'Response_Distribution' ),fn = function (column) {map (column, plot_hist_sbj) |> ggplot_image (height = px (80 ), aspect_ratio = 3 )|> mutate (total_time= as.numeric (` Total Time (min) ` )) |> rename ("Subject" = sbjCode, "N_Sets" = n_prototype_sets) |> summarize ("Median Completition time (min)" = median (total_time), "Average Completion Time" = mean (total_time), "Min Completion Time (min)" = min (total_time), "Max Completion Time (min)" = max (total_time)) |> kbl ()``` ## Lowest and Highest Rated Pairs ```{r} #| fig-width: 11 #| fig-height: 9 # patternCounts |> filter(n>=8) |> slice_min(resp) # patternCounts |> filter(n>=8) |> slice_max(resp) # setCounts |> filter(n>=24) |> slice_min(resp) # setCounts |> filter(n>=24) |> slice_max(resp) # pairCounts |> filter(n>=5) |> slice_min(resp,n=2) # pairCounts |> filter(n>=5) |> slice_max(resp) = 7 = 3 %>% filter (pair_label %in% {pairCounts |> filter (n>= min_resp) |> slice_min (mean_resp,n= n_show, with_ties= FALSE ) |> pull (pair_label)} ) |> group_by (pair_label) |> slice_head (n= 1 ) %>% plot_dotsAll () + plot_annotation (title= glue:: glue ("Lowest rated pairs ( out of sets with n>={min_resp} ratings)" ), theme = theme (plot.title = element_text (hjust = 0.4 )))%>% filter (pair_label %in% {pairCounts |> filter (n>= min_resp) |> slice_max (mean_resp,n= n_show, with_ties= FALSE ) |> pull (pair_label)} ) |> group_by (pair_label) |> slice_head (n= 1 ) %>% plot_dotsAll () + plot_annotation (title= glue:: glue ("Highest rated pairs ( out of sets with n>={min_resp} ratings)" ), theme = theme (plot.title = element_text (hjust = 0.4 )))``` ## All pairs with >=20 ratings - click on column headers to change sort order - e.g. clicking on "Mean Rating" will toggle showing the pairs rated most similar or most dissimilar - clicking on "SD" will toggle showing the pairs with the most or least agreement in ratings```{r} <- function (Pair) {|> filter (pair_label== Pair) |> ggplot (aes (x = response)) + geom_histogram (binwidth= 1 ,fill = 'dodgerblue4' ) + scale_x_continuous (breaks= seq (1 , 9 , by = 1 )) + coord_cartesian (xlim = c (1 , 9 )) + theme_minimal () + theme (axis.title.x= element_blank (),axis.title.y= element_blank (),axis.text.x= element_text (size= 26 )) <- function (Pair){<- d |> filter (pair_label== Pair) |> slice_head (n= 1 ) <- df %>% mutate (pattern_1 = purrr:: map (pattern_1, jsonlite:: fromJSON)) %>% unnest (pattern_1) %>% mutate (y= - y, pat= item_label_1) |> select (pair_label,x,y,pat)<- df %>% mutate (pattern_2 = purrr:: map (pattern_2, jsonlite:: fromJSON)) %>% unnest (pattern_2) %>% mutate (y= - y, pat= item_label_2) |> select (pair_label,x,y,pat)<- rbind (pat1,pat2)|> ggplot (aes (x = x, y = y,fill= pat,col= pat)) + geom_point (alpha= 2 ) + coord_cartesian (xlim = c (- 25 , 35.5 ), ylim = c (- 25 , 25 )) + theme_minimal () + facet_wrap2 (~ pat,ncol= 2 ,axes= "all" ) + #theme_blank + theme_void () + theme (strip.text = element_text (size = 7 ,hjust= .5 ),panel.spacing.x= unit (- 7.3 , "lines" ), #strip.background = element_rect(colour = "black", linewidth = 2), legend.position = "none" ,axis.line.y = element_line (colour = "black" , linewidth = .1 )) <- pairCounts |> filter (n>= 23 ) |> arrange (mean_resp) |> relocate (pair_label,.after= sd) |> rename ("Pair" = pair_label, "N" = n, "Mean Rating" = mean_resp, "SD" = sd) |> mutate (Rating_Dist= Pair) |> #group_by(Pair) |> gt () |> tab_options (table.font.size = px (8 L)) |> cols_width (~ px (116 ),~ px (415 ),` N ` ~ px (50 ),` Mean Rating ` ~ px (90 ),~ px (55 )|> fmt_number (decimals = 1 ) |> #fmt_integer() |> cols_align ('left' , columns = set) |> text_transform (locations = cells_body (columns = Pair),fn = function (column) {map (column, pat_table_plot) |> ggplot_image (height = px (230 ), aspect_ratio = 1.8 )|> text_transform (locations = cells_body (columns = Rating_Dist),fn = function (column) {map (column, plot_hist_pair) |> ggplot_image (height = px (150 ), aspect_ratio = 1 )|> opt_interactive (page_size_default= 5 , use_page_size_select= TRUE , use_search= TRUE , use_resizers= TRUE ,use_filters= TRUE , page_size_values = c (5 , 10 , 25 , 50 , 100 )) ``` <!-- ### Plot Pairs --> ```{r} # #| fig-cap: dot plots # #| fig-width: 10 # #| fig-height: 12 # d %>% filter(trial==1) %>% # plot_dots() # d %>% filter(trial==1) %>% # plot_dots2() # d %>% filter(trial<2) %>% # plot_dotsAll() ``` <!-- ### Compare to original prototypes --> ```{r} #| fig-width: 6 #| fig-height: 9 # d %>% filter(file %in% unique(d$file[1])) %>% # plot_dotsAll() # plot_dotsAll_orig <- function(df) { # plots <- list() # for (i in 1:nrow(df)) { # p1 <- df[i, ] %>% # pivot_longer(cols = starts_with("x"), names_to = "dot", values_to = "x") %>% # mutate(dot = as.numeric(str_remove(dot, "x"))) %>% # pivot_longer(cols = starts_with("y"), names_to = "dot2", values_to = "y") %>% # mutate(dot2 = as.numeric(str_remove(dot2, "y"))) %>% # filter(dot == dot2) %>% # ggplot(aes(x = x, y = y)) + # geom_point() + # coord_cartesian(xlim = c(-25, 25), ylim = c(-25, 25)) + # theme_minimal() + # labs(title = df$id[i]) + theme_blank # plots <- append(plots, list(p1)) # } # patchwork::wrap_plots(plots, ncol = 1) # } # mc24_proto |> filter(file %in% unique(d$file[1])) %>% plot_dotsAll_orig() ``` 
